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  5. GSVIVT01025536001

GSVIVT01025536001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor


Gene families : OG0001060 (Archaeplastida) Phylogenetic Tree(s): OG0001060_tree ,
OG_05_0004955 (LandPlants) Phylogenetic Tree(s): OG_05_0004955_tree ,
OG_06_0006068 (SeedPlants) Phylogenetic Tree(s): OG_06_0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025536001
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.02 Archaeplastida
Gb_11553 No alias HCF152 plastidial RNA transcript stability factor 0.04 Archaeplastida
Gb_16885 No alias HCF152 plastidial RNA transcript stability factor 0.03 Archaeplastida
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 363 388
IPR002885 Pentatricopeptide_repeat 506 533
IPR002885 Pentatricopeptide_repeat 540 585
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 396 426
No external refs found!