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  5. GSVIVT01025606001

GSVIVT01025606001


Description : 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree ,
OG_05_0002661 (LandPlants) Phylogenetic Tree(s): OG_05_0002661_tree ,
OG_06_0002546 (SeedPlants) Phylogenetic Tree(s): OG_06_0002546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025606001
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AMTR_s00029p00132520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.13 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.09 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
LOC_Os01g24690.1 No alias component RPL23a of LSU proteome component 0.16 Archaeplastida
LOC_Os04g42270.2 No alias component RPL23a of LSU proteome component 0.11 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.07 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.09 Archaeplastida
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.08 Archaeplastida
Pp3c13_15920V3.1 No alias ribosomal protein L23AB 0.03 Archaeplastida
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.08 Archaeplastida
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.08 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Solyc09g005720.3.1 No alias component RPL23a of LSU proteome component 0.05 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.08 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.08 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 2 53
No external refs found!