GSVIVT01025641001


Description : RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase


Gene families : OG0005882 (Archaeplastida) Phylogenetic Tree(s): OG0005882_tree ,
OG_05_0006934 (LandPlants) Phylogenetic Tree(s): OG_05_0006934_tree ,
OG_06_0006389 (SeedPlants) Phylogenetic Tree(s): OG_06_0006389_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025641001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT3G09720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Cpa|evm.model.tig00001071.15 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.01 Archaeplastida
Cre05.g238900 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.06 Archaeplastida
Gb_03067 No alias rRNA biogenesis RNA helicase (ROK1) 0.06 Archaeplastida
LOC_Os07g45360.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.08 Archaeplastida
MA_135845g0010 No alias No annotation 0.04 Archaeplastida
Mp7g07690.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.08 Archaeplastida
Pp3c10_21520V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Archaeplastida
Smo410231 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.03 Archaeplastida
Solyc09g007440.3.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0004814 arginine-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006420 arginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 151 316
IPR001650 Helicase_C 356 461
No external refs found!