GSVIVT01025691001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0001322 (LandPlants) Phylogenetic Tree(s): OG_05_0001322_tree ,
OG_06_0001040 (SeedPlants) Phylogenetic Tree(s): OG_06_0001040_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025691001
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01020805001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_23328 No alias transcription factor (ARF) 0.06 Archaeplastida
Gb_32404 No alias transcription factor (ARF) 0.06 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os02g46710.1 No alias Auxin response factor 12 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_122218g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c4_13010V3.1 No alias auxin response factor 16 0.02 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc09g007810.4.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc10g086130.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc12g042070.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 119 220
IPR010525 Auxin_resp 245 328
No external refs found!