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  5. GSVIVT01025694001

GSVIVT01025694001


Description : Laccase-11 OS=Arabidopsis thaliana


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025694001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00061860 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.04 Archaeplastida
AMTR_s00045p00045490 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
AMTR_s00055p00189700 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
AMTR_s00055p00190270 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
AT5G05390 LAC12 laccase 12 0.03 Archaeplastida
GSVIVT01012332001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.02 Archaeplastida
LOC_Os05g38420.1 No alias lignin laccase 0.03 Archaeplastida
MA_10427033g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_122769g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_213397g0020 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_28768g0010 No alias Laccase-4 OS=Arabidopsis thaliana (sp|o80434|lac4_arath... 0.02 Archaeplastida
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c18_3460V3.1 No alias laccase 12 0.03 Archaeplastida
Pp3c6_3290V3.1 No alias laccase 2 0.02 Archaeplastida
Smo105894 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo404333 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo438115 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc05g052370.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g048860.3.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.03 Archaeplastida
Solyc06g076760.2.1 No alias lignin laccase 0.03 Archaeplastida
Solyc07g049460.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.04 Archaeplastida
Zm00001e019303_P001 No alias lignin laccase 0.03 Archaeplastida
Zm00001e021354_P001 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 37 151
IPR011706 Cu-oxidase_2 432 545
IPR001117 Cu-oxidase 166 312
No external refs found!