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  5. GSVIVT01025872001

GSVIVT01025872001


Description : Protein degradation.peptide tagging.Membrane-anchored-Ubiquitin (MUB)-anchor addition.UBC-subclass-6 conjugation E2 protein


Gene families : OG0000275 (Archaeplastida) Phylogenetic Tree(s): OG0000275_tree ,
OG_05_0000172 (LandPlants) Phylogenetic Tree(s): OG_05_0000172_tree ,
OG_06_0000190 (SeedPlants) Phylogenetic Tree(s): OG_06_0000190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025872001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT3G13550 EMB144, CIN4, COP10, FUS9 Ubiquitin-conjugating enzyme family protein 0.04 Archaeplastida
AT4G27960 UBC9 ubiquitin conjugating enzyme 9 0.04 Archaeplastida
AT5G53300 UBC10 ubiquitin-conjugating enzyme 10 0.03 Archaeplastida
Cre06.g292800 No alias Protein degradation.peptide... 0.02 Archaeplastida
Gb_27882 No alias conjugation E2 protein 0.04 Archaeplastida
LOC_Os01g46926.1 No alias conjugation E2 protein 0.03 Archaeplastida
MA_10433663g0010 No alias conjugation E2 protein 0.02 Archaeplastida
MA_10437205g0010 No alias conjugation E2 protein 0.03 Archaeplastida
Mp3g18170.1 No alias conjugation E2 protein 0.02 Archaeplastida
Mp5g21800.1 No alias conjugation E2 protein 0.04 Archaeplastida
Pp3c14_23460V3.1 No alias ubiquitin-conjugating enzyme 10 0.02 Archaeplastida
Pp3c24_130V3.1 No alias Ubiquitin-conjugating enzyme family protein 0.04 Archaeplastida
Solyc06g007510.3.1 No alias conjugation E2 protein 0.08 Archaeplastida
Solyc06g082595.1.1 No alias conjugation E2 protein 0.03 Archaeplastida
Solyc08g008220.3.1 No alias conjugation E2 protein 0.03 Archaeplastida
Solyc08g081945.1.1 No alias conjugation E2 protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 5 141
No external refs found!