GSVIVT01025945001

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0001300 (SeedPlants) Phylogenetic Tree(s): OG_06_0001300_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01025945001
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00267050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00270400	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00002p00262770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00010p00214260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.03	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00025p00244880	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00071p00193200	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
AT1G17310	No alias	MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.04	Archaeplastida
AT2G22630	AGL17	AGAMOUS-like 17	0.04	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G61120	AGL13	AGAMOUS-like 13	0.02	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.02	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01010221001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01021534001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01022182001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01038474001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_12581	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Gb_15398	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os05g34940.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os07g01820.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os08g38590.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10256834g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10432602g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.05	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_32676g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_502016g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.01	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.05	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.02	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_8748850g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c17_5920V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Pp3c3_31770V3.1	No alias	AGAMOUS-like 104	0.03	Archaeplastida
Pp3c8_6920V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Pp3c9_1370V3.1	No alias	AGAMOUS-like 66	0.04	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.08	Archaeplastida
Solyc01g106720.1.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc03g114830.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc04g081000.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.05	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.03	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e003670_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e013738_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e015728_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901642	nucleoside transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	171

External Links

No external refs found!

GSVIVT01025945001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation