1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01026025001

GSVIVT01026025001


Description : Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026025001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.06 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G02010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.03 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.13 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_00194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_00201 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_01648 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_03473 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_03512 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_03631 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Gb_03997 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_05123 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
Gb_05942 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_06272 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.15 Archaeplastida
Gb_08560 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_08569 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_08745 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_09792 No alias RNA editing factor (MEF7) 0.08 Archaeplastida
Gb_10151 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
Gb_10158 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_11523 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_13369 No alias RNA editing factor (MEF12) 0.06 Archaeplastida
Gb_16017 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_16828 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_17094 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
Gb_20266 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_20749 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_20774 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21047 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_21056 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_21435 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_23083 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_24030 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_25271 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_26689 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_26696 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_26723 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.1 Archaeplastida
Gb_27176 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27460 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_27833 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_28038 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_28279 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_28612 No alias RNA editing factor (MEF11) 0.05 Archaeplastida
Gb_28787 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_29877 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_29879 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_29880 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_32455 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_33575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_34297 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_34298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_35042 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_37102 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_40040 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_40434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_41317 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
LOC_Os01g08120.1 No alias RNA editing factor (OTP81) 0.09 Archaeplastida
LOC_Os03g13230.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
LOC_Os03g63260.3 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
LOC_Os06g30940.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
LOC_Os07g10400.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os07g47370.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.05 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.05 Archaeplastida
LOC_Os09g07780.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
LOC_Os09g24680.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.08 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_5481g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_77437g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Solyc01g099000.1.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.12 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.05 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Solyc02g065560.1.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.07 Archaeplastida
Solyc02g080350.1.1 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.08 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida
Solyc02g093380.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.14 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc03g063690.1.1 No alias RNA editing factor (MEF1) 0.06 Archaeplastida
Solyc03g082830.2.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.12 Archaeplastida
Solyc03g093630.3.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Solyc03g097850.1.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.06 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.07 Archaeplastida
Solyc03g115790.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.05 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.05 Archaeplastida
Solyc06g082880.2.1 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.05 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.04 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.06 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.09 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.09 Archaeplastida
Solyc09g059575.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.14 Archaeplastida
Solyc09g075170.1.1 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.05 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.05 Archaeplastida
Solyc09g092150.1.1 No alias RNA editing factor (MEF21) 0.05 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc11g005960.1.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.1 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Solyc11g062250.2.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
Solyc11g065250.1.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.05 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 589 713
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 208 261
IPR002885 Pentatricopeptide_repeat 80 100
IPR002885 Pentatricopeptide_repeat 108 138
IPR002885 Pentatricopeptide_repeat 183 206
IPR002885 Pentatricopeptide_repeat 7 33
No external refs found!