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  5. GSVIVT01026178001

GSVIVT01026178001


Description : Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0010505 (Archaeplastida) Phylogenetic Tree(s): OG0010505_tree ,
OG_05_0010499 (LandPlants) Phylogenetic Tree(s): OG_05_0010499_tree ,
OG_06_0009831 (SeedPlants) Phylogenetic Tree(s): OG_06_0009831_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026178001
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00119450 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT5G08310 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
Gb_10306 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os05g24930.1 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
MA_10426691g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc04g009220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
Zm00001e000884_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 349
IPR002885 Pentatricopeptide_repeat 665 714
IPR002885 Pentatricopeptide_repeat 197 246
IPR002885 Pentatricopeptide_repeat 491 539
IPR002885 Pentatricopeptide_repeat 277 299
IPR002885 Pentatricopeptide_repeat 564 593
IPR002885 Pentatricopeptide_repeat 773 801
IPR002885 Pentatricopeptide_repeat 409 435
IPR002885 Pentatricopeptide_repeat 452 484
IPR002885 Pentatricopeptide_repeat 731 763
IPR002885 Pentatricopeptide_repeat 626 659
No external refs found!