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  5. GSVIVT01026268001

GSVIVT01026268001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026268001
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.9 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
Cre16.g689647 No alias Protein argonaute 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
MA_10429131g0010 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_18547g0010 No alias Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c19_860V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 357 477
IPR032472 ArgoL2 498 543
IPR032474 Argonaute_N 156 292
IPR003165 Piwi 656 954
IPR014811 ArgoL1 302 352
No external refs found!