1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01026450001

GSVIVT01026450001


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.ERCC6 chromatin remodeling factor


Gene families : OG0004952 (Archaeplastida) Phylogenetic Tree(s): OG0004952_tree ,
OG_05_0005405 (LandPlants) Phylogenetic Tree(s): OG_05_0005405_tree ,
OG_06_0005202 (SeedPlants) Phylogenetic Tree(s): OG_06_0005202_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026450001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT5G63950 CHR24 chromatin remodeling 24 0.09 Archaeplastida
Cpa|evm.model.tig00000441.21 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00001292.5 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_17075 No alias chromatin remodeling factor (ERCC6) 0.05 Archaeplastida
LOC_Os04g59624.2 No alias chromatin remodeling factor (ERCC6) 0.05 Archaeplastida
MA_18372g0010 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp1g29760.1 No alias chromatin remodeling factor (ERCC6) 0.04 Archaeplastida
Pp3c14_20620V3.1 No alias chromatin remodeling 24 0.05 Archaeplastida
Pp3c2_11030V3.1 No alias chromatin remodeling 24 0.04 Archaeplastida
Solyc01g068280.3.1 No alias chromatin remodeling factor (ERCC6) 0.1 Archaeplastida
Zm00001e007521_P001 No alias chromatin remodeling factor (ERCC6) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 343 635
IPR001650 Helicase_C 688 800
No external refs found!