GSVIVT01026463001


Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0010490 (SeedPlants) Phylogenetic Tree(s): OG_06_0010490_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026463001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
AT3G22670 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.07 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.06 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.07 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
Gb_21594 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.05 Archaeplastida
LOC_Os01g05860.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os01g60010.1 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_14956g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.04 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Zm00001e010274_P001 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.05 Archaeplastida
Zm00001e025816_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 406 454
IPR002885 Pentatricopeptide_repeat 221 269
IPR002885 Pentatricopeptide_repeat 116 160
IPR002885 Pentatricopeptide_repeat 335 381
IPR002885 Pentatricopeptide_repeat 304 333
No external refs found!