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  5. GSVIVT01026642001

GSVIVT01026642001


Description : HMG1/2-like protein OS=Glycine max


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0002258 (SeedPlants) Phylogenetic Tree(s): OG_06_0002258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026642001
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.06 Archaeplastida
Cpa|evm.model.tig00000553.19 No alias FACT complex subunit SSRP1 OS=Vicia faba 0.02 Archaeplastida
Cpa|evm.model.tig00000663.58 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00001339.6 No alias No description available 0.03 Archaeplastida
Gb_05796 No alias High mobility group B protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g01100.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os09g37910.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.1 Archaeplastida
Solyc02g082700.3.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.08 Archaeplastida
Solyc04g008820.3.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e013329_P001 No alias DNA-binding protein MNB1B OS=Zea mays... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 45 114
No external refs found!