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  5. AMTR_s00042p00120080

AMTR_s00042p00120080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00042.29

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.NC2 regulator complex.beta component


Gene families : OG0000142 (Archaeplastida) Phylogenetic Tree(s): OG0000142_tree ,
OG_05_0003843 (LandPlants) Phylogenetic Tree(s): OG_05_0003843_tree ,
OG_06_0004109 (SeedPlants) Phylogenetic Tree(s): OG_06_0004109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00042p00120080
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT5G23090 NF-YB13 nuclear factor Y, subunit B13 0.04 Archaeplastida
Gb_21904 No alias non-catalytic component Dpb4 of DNA polymerase epsilon complex 0.02 Archaeplastida
Mp3g09110.1 No alias non-catalytic component Dpb4 of DNA polymerase epsilon complex 0.03 Archaeplastida
Pp3c26_8280V3.1 No alias nuclear factor Y, subunit B11 0.02 Archaeplastida
Zm00001e033623_P001 No alias non-catalytic component Dpb4 of DNA polymerase epsilon complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000172 ribonuclease MRP complex IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006379 mRNA cleavage IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030677 ribonuclease P complex IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 15 79
No external refs found!