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  5. GSVIVT01026849001

GSVIVT01026849001


Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000926 (Archaeplastida) Phylogenetic Tree(s): OG0000926_tree ,
OG_05_0114116 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0092315 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01026849001
Cluster HCCA: Cluster_488

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 Archaeplastida
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
GSVIVT01007812001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.01 Archaeplastida
Gb_09450 No alias transcription factor (LIM) 0.03 Archaeplastida
Gb_11447 No alias transcription factor (LIM) 0.01 Archaeplastida
LOC_Os02g42820.1 No alias transcription factor (LIM) 0.01 Archaeplastida
LOC_Os04g45010.1 No alias transcription factor (LIM) 0.01 Archaeplastida
LOC_Os10g35930.1 No alias transcription factor (LIM) 0.03 Archaeplastida
MA_104604g0010 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc03g114000.3.1 No alias transcription factor (LIM) 0.05 Archaeplastida
Zm00001e007423_P001 No alias transcription factor (LIM) 0.03 Archaeplastida
Zm00001e015234_P001 No alias transcription factor (LIM) 0.01 Archaeplastida
Zm00001e023098_P001 No alias transcription factor (LIM) 0.01 Archaeplastida
Zm00001e029431_P002 No alias transcription factor (LIM) 0.04 Archaeplastida
Zm00001e041310_P001 No alias transcription factor (LIM) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR001781 Znf_LIM 107 151
IPR001781 Znf_LIM 10 65
No external refs found!