GSVIVT01026985001

Description : Probable polygalacturonase OS=Vitis vinifera

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0002536 (SeedPlants) Phylogenetic Tree(s): OG_06_0002536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01026985001
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00118570	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.04	Archaeplastida
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
AT3G16850	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT4G23820	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G41870	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G49215	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
GSVIVT01028057001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.02	Archaeplastida
Gb_39001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
LOC_Os01g43160.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
LOC_Os02g15690.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.08	Archaeplastida
LOC_Os03g03350.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
LOC_Os03g61800.2	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
LOC_Os05g50960.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
LOC_Os12g36810.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
MA_10431597g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10436451g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Mp7g13870.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c6_7160V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Smo78556	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
Solyc03g007950.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Solyc07g042160.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Solyc08g081480.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Solyc09g075460.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.08	Archaeplastida
Zm00001e021051_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Zm00001e023760_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e026646_P002	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e039674_P002	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0047429	nucleoside-triphosphate diphosphatase activity	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901642	nucleoside transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	144	266

External Links

No external refs found!

GSVIVT01026985001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation