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  5. GSVIVT01027072001

GSVIVT01027072001


Description : Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana


Gene families : OG0004858 (Archaeplastida) Phylogenetic Tree(s): OG0004858_tree ,
OG_05_0005720 (LandPlants) Phylogenetic Tree(s): OG_05_0005720_tree ,
OG_06_0005849 (SeedPlants) Phylogenetic Tree(s): OG_06_0005849_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027072001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00122560 evm_27.TU.AmTr_v1... Ribosome biogenesis regulatory protein homolog... 0.06 Archaeplastida
Cpa|evm.model.tig00000215.62 No alias Ribosome biogenesis regulatory protein homolog... 0.04 Archaeplastida
Cre01.g020950 No alias Ribosome biogenesis regulatory protein homolog... 0.17 Archaeplastida
Gb_25591 No alias component ARRS1 of ARPF2-ARRS1 complex 0.04 Archaeplastida
Gb_41748 No alias component ARRS1 of ARPF2-ARRS1 complex 0.03 Archaeplastida
LOC_Os04g58830.1 No alias component ARRS1 of ARPF2-ARRS1 complex 0.12 Archaeplastida
Mp1g07840.1 No alias component ARRS1 of ARPF2-ARRS1 complex 0.16 Archaeplastida
Pp3c3_32550V3.1 No alias ribosome biogenesis regulatory protein (RRS1) family protein 0.09 Archaeplastida
Zm00001e016688_P001 No alias component ARRS1 of ARPF2-ARRS1 complex 0.04 Archaeplastida
Zm00001e025915_P002 No alias component ARRS1 of ARPF2-ARRS1 complex 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 6 168
No external refs found!