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  5. GSVIVT01027435001

GSVIVT01027435001


Description : Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana


Gene families : OG0011424 (Archaeplastida) Phylogenetic Tree(s): OG0011424_tree ,
OG_05_0011281 (LandPlants) Phylogenetic Tree(s): OG_05_0011281_tree ,
OG_06_0010435 (SeedPlants) Phylogenetic Tree(s): OG_06_0010435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027435001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G05600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_23196 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.04 Archaeplastida
MA_90107g0010 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.04 Archaeplastida
Zm00001e028501_P001 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Neighborhood
BP GO:0006144 purine nucleobase metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009113 purine nucleobase biosynthetic process IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 117 140
IPR002885 Pentatricopeptide_repeat 403 431
IPR002885 Pentatricopeptide_repeat 48 76
IPR002885 Pentatricopeptide_repeat 227 256
IPR002885 Pentatricopeptide_repeat 298 327
IPR002885 Pentatricopeptide_repeat 82 111
IPR002885 Pentatricopeptide_repeat 361 392
IPR002885 Pentatricopeptide_repeat 154 197
No external refs found!