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  5. GSVIVT01027438001

GSVIVT01027438001


Description : Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS8 CORVET-specific component


Gene families : OG0004740 (Archaeplastida) Phylogenetic Tree(s): OG0004740_tree ,
OG_05_0005069 (LandPlants) Phylogenetic Tree(s): OG_05_0005069_tree ,
OG_06_0007490 (SeedPlants) Phylogenetic Tree(s): OG_06_0007490_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027438001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00112150 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.04 Archaeplastida
AT4G00800 No alias transducin family protein / WD-40 repeat family protein 0.11 Archaeplastida
Gb_27586 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.06 Archaeplastida
LOC_Os02g03220.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 Archaeplastida
MA_37485g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g08230.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.05 Archaeplastida
Pp3c17_2710V3.1 No alias transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
Solyc05g044610.3.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.06 Archaeplastida
Zm00001e013515_P001 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.08 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025941 Vps8_central_dom 961 1145
IPR000547 Clathrin_H-chain/VPS_repeat 1432 1537
No external refs found!