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  5. GSVIVT01027456001

GSVIVT01027456001


Description : Multi-process regulation.circadian clock.core oscillator protein (LHY, CCA1)


Gene families : OG0000637 (Archaeplastida) Phylogenetic Tree(s): OG0000637_tree ,
OG_05_0010146 (LandPlants) Phylogenetic Tree(s): OG_05_0010146_tree ,
OG_06_0010117 (SeedPlants) Phylogenetic Tree(s): OG_06_0010117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027456001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00072910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
AT1G01520 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT3G09600 No alias Homeodomain-like superfamily protein 0.06 Archaeplastida
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.05 Archaeplastida
LOC_Os02g45670.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.03 Archaeplastida
LOC_Os06g01670.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.04 Archaeplastida
LOC_Os06g51260.1 No alias transcription factor (MYB-related) 0.07 Archaeplastida
Solyc03g098320.4.1 No alias transcription factor (MYB-related) 0.13 Archaeplastida
Solyc10g084370.3.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.14 Archaeplastida
Zm00001e013333_P002 No alias transcription factor (MYB-related) 0.12 Archaeplastida
Zm00001e023232_P002 No alias transcription factor (MYB-related). REVEILLE circadian... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!