1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01027577001

GSVIVT01027577001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000791 (SeedPlants) Phylogenetic Tree(s): OG_06_0000791_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027577001
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.04 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.03 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G51860 No alias K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT5G51870 AGL71 AGAMOUS-like 71 0.04 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os05g11380.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os08g41950.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os12g10540.3 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.03 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c8_6920V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.04 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.06 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030839_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 169
IPR002100 TF_MADSbox 10 57
No external refs found!