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  5. GSVIVT01027620001

GSVIVT01027620001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000938 (Archaeplastida) Phylogenetic Tree(s): OG0000938_tree ,
OG_05_0000559 (LandPlants) Phylogenetic Tree(s): OG_05_0000559_tree ,
OG_06_0000336 (SeedPlants) Phylogenetic Tree(s): OG_06_0000336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027620001
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT2G42440 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
AT2G45410 LBD19 LOB domain-containing protein 19 0.08 Archaeplastida
AT3G58190 LBD29, ASL16 lateral organ boundaries-domain 29 0.03 Archaeplastida
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
AT5G06080 LBD33 LOB domain-containing protein 33 0.03 Archaeplastida
GSVIVT01029979001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
LOC_Os03g05500.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_126761g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_3123g0010 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
MA_8060019g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_962403g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp8g11560.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Pp3c11_11230V3.1 No alias LOB domain-containing protein 20 0.03 Archaeplastida
Solyc01g091400.3.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Solyc01g091420.2.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e001031_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e019686_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e038582_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e042449_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 11 109
No external refs found!