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  5. GSVIVT01027813001

GSVIVT01027813001


Description : Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica


Gene families : OG0004562 (Archaeplastida) Phylogenetic Tree(s): OG0004562_tree ,
OG_05_0005673 (LandPlants) Phylogenetic Tree(s): OG_05_0005673_tree ,
OG_06_0006060 (SeedPlants) Phylogenetic Tree(s): OG_06_0006060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027813001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT4G37120 SMP2 Pre-mRNA splicing Prp18-interacting factor 0.03 Archaeplastida
Cpa|evm.model.tig00000217.42 No alias Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os08g03390.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 Archaeplastida
MA_193313g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g12350.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.07 Archaeplastida
Solyc09g072570.3.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.05 Archaeplastida
Zm00001e029263_P001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR021715 Slu7 168 346
No external refs found!