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  5. GSVIVT01027871001

GSVIVT01027871001


Description : Splicing factor U2af large subunit A OS=Arabidopsis thaliana


Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree ,
OG_05_0005337 (LandPlants) Phylogenetic Tree(s): OG_05_0005337_tree ,
OG_06_0007539 (SeedPlants) Phylogenetic Tree(s): OG_06_0007539_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027871001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT2G33435 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cre09.g391949 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Gb_01578 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.05 Archaeplastida
LOC_Os03g04520.2 No alias Splicing factor U2af large subunit B OS=Nicotiana... 0.05 Archaeplastida
MA_10429502g0010 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 Archaeplastida
MA_96898g0010 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 Archaeplastida
Mp6g18910.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Pp3c14_9430V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 Archaeplastida
Pp3c25_5610V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Archaeplastida
Pp3c6_9210V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 Archaeplastida
Smo153568 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Smo160385 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Solyc02g062920.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Solyc02g085570.4.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Solyc09g090420.4.1 No alias Splicing factor U2af large subunit B OS=Oryza sativa... 0.08 Archaeplastida
Solyc12g008750.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Zm00001e021000_P006 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 Archaeplastida
Zm00001e038951_P001 No alias Splicing factor U2af large subunit A OS=Nicotiana... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 515 582
No external refs found!