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  5. AMTR_s00043p00149000

AMTR_s00043p00149000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00043.28

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component


Gene families : OG0003953 (Archaeplastida) Phylogenetic Tree(s): OG0003953_tree ,
OG_05_0004003 (LandPlants) Phylogenetic Tree(s): OG_05_0004003_tree ,
OG_06_0005410 (SeedPlants) Phylogenetic Tree(s): OG_06_0005410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00043p00149000
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
AT4G15180 SDG2, ATXR3 SET domain protein 2 0.09 Archaeplastida
Cre17.g742700 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
GSVIVT01030649001 No alias Chromatin organisation.histone modifications.histone... 0.09 Archaeplastida
LOC_Os08g08210.1 No alias class III/Trithorax histone methyltransferase component... 0.06 Archaeplastida
MA_102811g0010 No alias class III/Trithorax histone methyltransferase component... 0.12 Archaeplastida
MA_102811g0020 No alias class III/Trithorax histone methyltransferase component... 0.02 Archaeplastida
Mp2g06500.1 No alias class III/Trithorax histone methyltransferase component... 0.09 Archaeplastida
Pp3c11_18840V3.1 No alias SET domain protein 2 0.08 Archaeplastida
Smo432361 No alias Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
Smo447947 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Solyc07g052940.4.1 No alias class III/Trithorax histone methyltransferase component... 0.1 Archaeplastida
Zm00001e021659_P001 No alias class III/Trithorax histone methyltransferase component... 0.08 Archaeplastida
Zm00001e039942_P003 No alias class III/Trithorax histone methyltransferase component... 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001214 SET_dom 1822 1878
No external refs found!