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  5. GSVIVT01027997001

GSVIVT01027997001


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SR30/34 splicing factor


Gene families : OG0001375 (Archaeplastida) Phylogenetic Tree(s): OG0001375_tree ,
OG_05_0001509 (LandPlants) Phylogenetic Tree(s): OG_05_0001509_tree ,
OG_06_0001416 (SeedPlants) Phylogenetic Tree(s): OG_06_0001416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027997001
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cre06.g278239 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 Archaeplastida
LOC_Os05g30140.1 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
LOC_Os07g47630.1 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 113 175
No external refs found!