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  5. GSVIVT01028054001

GSVIVT01028054001


Description : ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana


Gene families : OG0006300 (Archaeplastida) Phylogenetic Tree(s): OG0006300_tree ,
OG_05_0007060 (LandPlants) Phylogenetic Tree(s): OG_05_0007060_tree ,
OG_06_0008527 (SeedPlants) Phylogenetic Tree(s): OG_06_0008527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028054001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre07.g352251 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os02g50370.1 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.03 Archaeplastida
MA_10428112g0010 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e015757_P002 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 698 810
IPR011709 DUF1605 868 929
IPR011545 DEAD/DEAH_box_helicase_dom 246 424
IPR001650 Helicase_C 547 636
No external refs found!