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  5. GSVIVT01028104001

GSVIVT01028104001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional BXL-type alpha-L-arabinofuranosidase and beta-D-xylosidase


Gene families : OG0000435 (Archaeplastida) Phylogenetic Tree(s): OG0000435_tree ,
OG_05_0000257 (LandPlants) Phylogenetic Tree(s): OG_05_0000257_tree ,
OG_06_0001017 (SeedPlants) Phylogenetic Tree(s): OG_06_0001017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028104001
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00246460 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AMTR_s00057p00049120 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 Archaeplastida
AT3G19620 No alias Glycosyl hydrolase family protein 0.04 Archaeplastida
Gb_32463 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Archaeplastida
Gb_34864 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
LOC_Os01g19220.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
LOC_Os02g51620.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.05 Archaeplastida
LOC_Os04g54810.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
LOC_Os11g18730.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
LOC_Os11g19210.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
MA_102783g0010 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Archaeplastida
MA_39151g0010 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
MA_99945g0010 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
Smo112087 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
Solyc01g079570.3.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.06 Archaeplastida
Solyc04g072850.4.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Archaeplastida
Zm00001e007432_P001 No alias bifunctional alpha-L-arabinofuranosidase and... 0.05 Archaeplastida
Zm00001e008876_P002 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
Zm00001e015868_P001 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Archaeplastida
Zm00001e037605_P001 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 395 625
IPR026891 Fn3-like 689 751
IPR001764 Glyco_hydro_3_N 110 351
No external refs found!