Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana
Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0003517 (LandPlants) Phylogenetic Tree(s): OG_05_0003517_tree ,
OG_06_0003536 (SeedPlants) Phylogenetic Tree(s): OG_06_0003536_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01028153001 | |
Cluster | HCCA: Cluster_233 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00019p00154740 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.03 | Archaeplastida | |
AT1G32490 | ESP3, EMB2733 | RNA helicase family protein | 0.03 | Archaeplastida | |
AT4G01020 | No alias | helicase domain-containing protein / IBR... | 0.03 | Archaeplastida | |
Cpa|evm.model.tig00000842.2 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | Archaeplastida | |
Cpa|evm.model.tig00000984.27 | No alias | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00021589.28 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | Archaeplastida | |
Cpa|evm.model.tig00021589.29 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | Archaeplastida | |
Cre07.g329150 | No alias | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | Archaeplastida | |
Cre07.g349100 | No alias | RNA processing.RNA splicing.spliceosome... | 0.02 | Archaeplastida | |
Cre24.g755347 | No alias | RNA processing.RNA splicing.spliceosome... | 0.02 | Archaeplastida | |
Gb_22388 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.04 | Archaeplastida | |
LOC_Os03g19960.1 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida | |
LOC_Os07g32430.1 | No alias | RNA helicase (Prp16) | 0.03 | Archaeplastida | |
LOC_Os08g24760.1 | No alias | RNA helicase (Prp2) | 0.02 | Archaeplastida | |
MA_10436572g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
MA_277016g0010 | No alias | RNA helicase (Prp2) | 0.03 | Archaeplastida | |
MA_34468g0010 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida | |
Mp4g02780.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | Archaeplastida | |
Mp4g16380.1 | No alias | RNA helicase (Prp2) | 0.02 | Archaeplastida | |
Pp3c1_18490V3.1 | No alias | RNA helicase family protein | 0.02 | Archaeplastida | |
Pp3c23_12820V3.1 | No alias | RNA helicase family protein | 0.02 | Archaeplastida | |
Pp3c23_5290V3.1 | No alias | RNA helicase family protein | 0.05 | Archaeplastida | |
Pp3c24_1890V3.1 | No alias | RNA helicase family protein | 0.02 | Archaeplastida | |
Solyc01g079250.3.1 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida | |
Solyc03g115390.4.1 | No alias | RNA helicase (Prp2) | 0.03 | Archaeplastida | |
Solyc05g015040.4.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | Archaeplastida | |
Solyc07g039550.4.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | Archaeplastida | |
Zm00001e001487_P003 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | Archaeplastida | |
Zm00001e022095_P001 | No alias | RNA helicase (Prp2) | 0.03 | Archaeplastida | |
Zm00001e028404_P001 | No alias | RNA helicase (Prp22) | 0.04 | Archaeplastida | |
Zm00001e036358_P005 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | Archaeplastida | |
Zm00001e038305_P001 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
MF | GO:0005244 | voltage-gated ion channel activity | IEP | Neighborhood |
MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Neighborhood |
MF | GO:0005253 | anion channel activity | IEP | Neighborhood |
MF | GO:0005254 | chloride channel activity | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0006821 | chloride transport | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
MF | GO:0008308 | voltage-gated anion channel activity | IEP | Neighborhood |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Neighborhood |
MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0016197 | endosomal transport | IEP | Neighborhood |
BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
BP | GO:0016482 | cytosolic transport | IEP | Neighborhood |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
MF | GO:0022832 | voltage-gated channel activity | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0030906 | retromer, cargo-selective complex | IEP | Neighborhood |
CC | GO:0031360 | intrinsic component of thylakoid membrane | IEP | Neighborhood |
CC | GO:0031361 | integral component of thylakoid membrane | IEP | Neighborhood |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
No external refs found! |