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  5. GSVIVT01028203001

GSVIVT01028203001


Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component


Gene families : OG0005716 (Archaeplastida) Phylogenetic Tree(s): OG0005716_tree ,
OG_05_0006042 (LandPlants) Phylogenetic Tree(s): OG_05_0006042_tree ,
OG_06_0006888 (SeedPlants) Phylogenetic Tree(s): OG_06_0006888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028203001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00068210 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Cre04.g217991 No alias No description available 0.01 Archaeplastida
Gb_26563 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.03 Archaeplastida
LOC_Os03g02110.1 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.06 Archaeplastida
MA_10435586g0010 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.02 Archaeplastida
Mp4g23640.1 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.07 Archaeplastida
Pp3c3_23690V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Solyc01g068070.4.1 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.06 Archaeplastida
Zm00001e039079_P002 No alias component TRM734 of TRM7-TRM732/TRM734 tRNA... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 231 262
No external refs found!