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  5. GSVIVT01028208001

GSVIVT01028208001


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0001192 (LandPlants) Phylogenetic Tree(s): OG_05_0001192_tree ,
OG_06_0006386 (SeedPlants) Phylogenetic Tree(s): OG_06_0006386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028208001
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G76580 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.03 Archaeplastida
AT5G50570 SPL13, SPL13A Squamosa promoter-binding protein-like (SBP domain)... 0.05 Archaeplastida
AT5G50670 SPL13, SPL13B Squamosa promoter-binding protein-like (SBP domain)... 0.05 Archaeplastida
Cre09.g390023 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre16.g686100 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre17.g698233 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Gb_37539 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_41517 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os06g45310.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_10427464g0010 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_10432997g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_273100g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g13640.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Pp3c12_24350V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c14_18960V3.1 No alias squamosa promoter-binding protein-like 12 0.02 Archaeplastida
Pp3c16_7540V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc01g068100.4.1 No alias Squamosa promoter-binding-like protein 1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc05g053240.4.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e006252_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e025128_P001 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 131 204
No external refs found!