AT1G49210

Description : RING/U-box superfamily protein

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0008073 (SeedPlants) Phylogenetic Tree(s): OG_06_0008073_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G49210
Cluster	HCCA: Cluster_201

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00263220	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00004p00172400	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AMTR_s00021p00161170	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00025p00229930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AT1G63840	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT1G67856	No alias	RING/U-box superfamily protein	0.1	Archaeplastida
AT2G17730	NIP2	NEP-interacting protein 2	0.03	Archaeplastida
AT2G42360	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT2G44578	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT3G20395	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
AT4G00305	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT4G35480	RHA3B	RING-H2 finger A3B	0.06	Archaeplastida
AT4G38140	No alias	RING/U-box superfamily protein	0.07	Archaeplastida
AT5G06490	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
AT5G07040	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G58580	ATL63, TL63	TOXICOS EN LEVADURA 63	0.04	Archaeplastida
AT5G66070	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Cpa\|evm.model.tig00020943.22	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Cre01.g009101	No alias	No description available	0.03	Archaeplastida
Cre01.g051700	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.01	Archaeplastida
GSVIVT01000538001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
GSVIVT01009096001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01009098001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01012015001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01012022001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01020665001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01026703001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01026978001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01032684001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01037651001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_02533	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Gb_04642	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Gb_14775	No alias	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Gb_14777	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_23066	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_23076	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_28973	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.02	Archaeplastida
Gb_28980	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_35824	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Gb_40644	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os01g11500.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os01g53500.1	No alias	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os01g64620.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g35347.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g35365.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g36300.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g37450.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g45710.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g45780.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g49710.1	No alias	IDF1 iron uptake IRT1-ubiquitin ligase	0.03	Archaeplastida
LOC_Os02g57460.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g44636.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os03g57410.1	No alias	Putative RING-H2 finger protein ATL71 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g16970.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os04g49550.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os05g15170.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os05g39260.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g45060.1	No alias	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os06g08820.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os06g11450.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os06g34560.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os06g45580.1	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os07g34180.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os08g43670.1	No alias	NEP1-interacting protein 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os09g36500.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os09g37050.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os10g39770.1	No alias	NEP1-interacting protein 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os12g02220.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g24490.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os12g40460.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_10021g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_10260361g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10435495g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_10436650g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_12363g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_13397g0010	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_15246g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_159453g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_17390g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_181940g0010	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
MA_214717g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_2159g0010	No alias	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_229590g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_308999g0010	No alias	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_308999g0020	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_31736g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_373963g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_5319g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_6931619g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_7553g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_85088g0010	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
MA_895676g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Mp5g08270.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Pp3c18_5860V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c1_32230V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c20_11600V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c23_1651V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c26_11650V3.1	No alias	TOXICOS EN LEVADURA 2	0.02	Archaeplastida
Smo101273	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Smo402335	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
Smo96681	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
Solyc01g006910.4.1	No alias	RING-H2-class E3 ligase	0.07	Archaeplastida
Solyc01g109200.4.1	No alias	RING-H2-class E3 ligase	0.07	Archaeplastida
Solyc02g082420.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc03g114190.1.1	No alias	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc03g123680.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc04g081890.1.1	No alias	E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc05g010170.2.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc05g010175.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc06g007230.2.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc06g053640.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc06g061250.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc06g063110.3.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Solyc06g150136.1.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Solyc07g053420.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc08g008080.1.1	No alias	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis...	0.05	Archaeplastida
Solyc09g075320.1.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Solyc09g089890.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc10g008080.3.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc10g009487.1.1	No alias	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc11g005290.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc11g007530.2.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc11g066510.3.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc12g087840.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e007956_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e010787_P001	No alias	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e013809_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e014709_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e014764_P001	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e015470_P001	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Zm00001e015805_P001	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e015905_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e016474_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e017509_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e017960_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e018028_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e019779_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e021729_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e022742_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023234_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e023723_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e026193_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e029032_P001	No alias	RING-H2-class E3 ligase	0.08	Archaeplastida
Zm00001e032186_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e032838_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e037108_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e038229_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e041385_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e041409_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
CC	GO:0000502	proteasome complex	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
CC	GO:0008180	COP9 signalosome	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
BP	GO:0009269	response to desiccation	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
MF	GO:0010487	thermospermine synthase activity	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0016768	spermine synthase activity	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048759	xylem vessel member cell differentiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1905177	tracheary element differentiation	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	134	177

External Links

No external refs found!

AT1G49210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation