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  5. GSVIVT01028373001

GSVIVT01028373001


Description : Cellular respiration.tricarboxylic acid cycle.succinyl-CoA ligase dimer.beta subunit


Gene families : OG0005323 (Archaeplastida) Phylogenetic Tree(s): OG0005323_tree ,
OG_05_0006581 (LandPlants) Phylogenetic Tree(s): OG_05_0006581_tree ,
OG_06_0008653 (SeedPlants) Phylogenetic Tree(s): OG_06_0008653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028373001
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00119600 evm_27.TU.AmTr_v1... Cellular respiration.tricarboxylic acid... 0.02 Archaeplastida
AT2G20420 No alias ATP citrate lyase (ACL) family protein 0.05 Archaeplastida
Cpa|evm.model.tig00001376.28 No alias Cellular respiration.tricarboxylic acid... 0.01 Archaeplastida
Cre17.g703700 No alias Cellular respiration.tricarboxylic acid... 0.01 Archaeplastida
Gb_21325 No alias subunit beta of succinyl-CoA ligase heterodimer 0.07 Archaeplastida
LOC_Os02g40830.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.04 Archaeplastida
MA_627804g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g04210.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.03 Archaeplastida
Pp3c20_5640V3.1 No alias ATP citrate lyase (ACL) family protein 0.02 Archaeplastida
Smo419323 No alias Cellular respiration.tricarboxylic acid... 0.04 Archaeplastida
Solyc06g083790.3.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.04 Archaeplastida
Zm00001e015140_P001 No alias subunit beta of succinyl-CoA ligase heterodimer 0.04 Archaeplastida
Zm00001e023009_P001 No alias subunit beta of succinyl-CoA ligase heterodimer 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR005811 CoA_ligase 297 417
IPR013650 ATP-grasp_succ-CoA_synth-type 29 237
No external refs found!