GSVIVT01028380001


Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor


Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028380001
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00236880 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AMTR_s00010p00239860 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00010p00255890 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AT5G07900 No alias Mitochondrial transcription termination factor family protein 0.06 Archaeplastida
GSVIVT01022213001 No alias RNA biosynthesis.organelle... 0.08 Archaeplastida
Gb_26175 No alias transcription factor (mTERF) 0.04 Archaeplastida
Gb_26176 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os02g51450.2 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os04g54510.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os05g33440.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
LOC_Os11g09990.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
MA_192398g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_3151g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_493420g0010 No alias transcription factor (mTERF) 0.07 Archaeplastida
MA_7539255g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_92135g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
Pp3c4_13990V3.1 No alias Mitochondrial transcription termination factor family protein 0.04 Archaeplastida
Solyc02g067960.3.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g011700.2.1 No alias transcription factor (mTERF) 0.06 Archaeplastida
Solyc04g051880.3.1 No alias transcription factor (mTERF) 0.05 Archaeplastida
Solyc04g072500.1.1 No alias transcription factor (mTERF) 0.06 Archaeplastida
Zm00001e010589_P001 No alias transcription factor (mTERF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Neighborhood
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 264 371
IPR003690 MTERF 97 249
No external refs found!