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Description : Cell wall.pectin.modification and degradation.pectate lyase
Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01028548001 | |
| Cluster | HCCA: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00039p00186640 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| AMTR_s00039p00189000 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AMTR_s00049p00173370 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AT1G11920 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| AT1G67750 | No alias | Pectate lyase family protein | 0.02 | Archaeplastida | |
| AT2G02720 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT3G24230 | No alias | Pectate lyase family protein | 0.05 | Archaeplastida | |
| AT3G24670 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT3G27400 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| AT4G22080 | RHS14 | root hair specific 14 | 0.06 | Archaeplastida | |
| AT4G22090 | No alias | Pectin lyase-like superfamily protein | 0.01 | Archaeplastida | |
| AT5G09280 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G15110 | No alias | Pectate lyase family protein | 0.04 | Archaeplastida | |
| AT5G48900 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01003984001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.06 | Archaeplastida | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| GSVIVT01020067001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01020068001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01029048001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| Gb_02248 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Gb_04024 | No alias | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
| Gb_26755 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| LOC_Os02g12300.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| LOC_Os04g05050.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_101171g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10353668g0010 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_10426822g0020 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10437227g0020 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_1164682g0010 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_170547g0010 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_204440g0010 | No alias | Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... | 0.04 | Archaeplastida | |
| MA_474372g0010 | No alias | pectate lyase | 0.01 | Archaeplastida | |
| MA_91467g0020 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_97947g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Mp8g00770.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Mp8g10190.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Pp3c17_16370V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_10470V3.1 | No alias | Pectin lyase-like superfamily protein | 0.01 | Archaeplastida | |
| Pp3c1_33130V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c3_35190V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Solyc02g087670.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g093580.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc05g014000.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004506 | squalene monooxygenase activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0004650 | polygalacturonase activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Neighborhood |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008236 | serine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
| CC | GO:0016020 | membrane | IEP | Neighborhood |
| CC | GO:0016021 | integral component of membrane | IEP | Neighborhood |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0016746 | transferase activity, transferring acyl groups | IEP | Neighborhood |
| MF | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0017171 | serine hydrolase activity | IEP | Neighborhood |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Neighborhood |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Neighborhood |
| MF | GO:0033897 | ribonuclease T2 activity | IEP | Neighborhood |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Neighborhood |
| CC | GO:0044425 | membrane part | IEP | Neighborhood |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 182 | 360 |
| No external refs found! |