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  5. AMTR_s00043p00213130

AMTR_s00043p00213130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00043.78

No description available


Gene families : OG0003875 (Archaeplastida) Phylogenetic Tree(s): OG0003875_tree ,
OG_05_0002686 (LandPlants) Phylogenetic Tree(s): OG_05_0002686_tree ,
OG_06_0001535 (SeedPlants) Phylogenetic Tree(s): OG_06_0001535_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00043p00213130
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00063580 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00081p00023910 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00086p00142850 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00147p00021930 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00150p00047480 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00180p00021750 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016032 viral process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR000721 Gag_p24 86 122
IPR005162 Retrotrans_gag_dom 55 139
No external refs found!