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  5. GSVIVT01028689001

GSVIVT01028689001


Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0001965 (LandPlants) Phylogenetic Tree(s): OG_05_0001965_tree ,
OG_06_0003421 (SeedPlants) Phylogenetic Tree(s): OG_06_0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028689001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.06 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 Archaeplastida
MA_10432680g0020 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.05 Archaeplastida
Mp5g02180.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Pp3c6_14920V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
Zm00001e007821_P003 No alias no hits & (original description: none) 0.11 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.04 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 169
IPR002885 Pentatricopeptide_repeat 304 361
IPR002885 Pentatricopeptide_repeat 174 219
IPR002885 Pentatricopeptide_repeat 242 290
IPR002885 Pentatricopeptide_repeat 419 465
No external refs found!