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  5. AMTR_s00043p00225670

AMTR_s00043p00225670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00043.85

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000624 (Archaeplastida) Phylogenetic Tree(s): OG0000624_tree ,
OG_05_0000347 (LandPlants) Phylogenetic Tree(s): OG_05_0000347_tree ,
OG_06_0000255 (SeedPlants) Phylogenetic Tree(s): OG_06_0000255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00043p00225670
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00167p00019840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G31050 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Gb_06063 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_07584 No alias transcription factor (bHLH) 0.02 Archaeplastida
Gb_33415 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_114573g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc01g150101.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g079760.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc06g066580.4.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc10g006640.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e010350_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e014179_P003 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e016395_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e034854_P002 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e039938_P002 No alias transcription factor (bHLH) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!