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  5. GSVIVT01028712001

GSVIVT01028712001


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0018141 (Archaeplastida) Phylogenetic Tree(s): OG0018141_tree ,
OG_05_0015797 (LandPlants) Phylogenetic Tree(s): OG_05_0015797_tree ,
OG_06_0015533 (SeedPlants) Phylogenetic Tree(s): OG_06_0015533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028712001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Solyc03g007350.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 391 437
IPR002885 Pentatricopeptide_repeat 491 539
IPR002885 Pentatricopeptide_repeat 62 109
IPR002885 Pentatricopeptide_repeat 194 242
IPR002885 Pentatricopeptide_repeat 35 61
IPR002885 Pentatricopeptide_repeat 330 357
IPR002885 Pentatricopeptide_repeat 302 327
IPR002885 Pentatricopeptide_repeat 567 590
IPR002885 Pentatricopeptide_repeat 362 387
No external refs found!