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Description : Cell wall.pectin.modification and degradation.pectate lyase
Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01029048001 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00039p00186640 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AMTR_s00039p00189000 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AMTR_s00049p00173370 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AMTR_s00120p00111300 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT1G30350 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| AT1G67750 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.07 | Archaeplastida | |
| AT3G24230 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| AT3G24670 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G48900 | No alias | Pectin lyase-like superfamily protein | 0.05 | Archaeplastida | |
| GSVIVT01008053001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.05 | Archaeplastida | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.05 | Archaeplastida | |
| GSVIVT01020067001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.06 | Archaeplastida | |
| GSVIVT01020068001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.05 | Archaeplastida | |
| GSVIVT01028548001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| LOC_Os02g12300.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| LOC_Os04g05050.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| LOC_Os06g05260.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| LOC_Os06g38510.2 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10332686g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_103716g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_10430145g0020 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_10430145g0030 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10433252g0020 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_10437227g0030 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_203992g0010 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| MA_204440g0010 | No alias | Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... | 0.03 | Archaeplastida | |
| MA_66914g0010 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| MA_956526g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Mp8g00770.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Mp8g10190.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Pp3c10_20140V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_33130V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_35100V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c3_35190V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Solyc01g010740.4.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Solyc02g067450.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g080910.4.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Solyc02g087670.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g093580.4.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Solyc03g071570.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc03g111690.4.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Solyc03g113150.3.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc05g007080.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc06g071840.3.1 | No alias | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
| Solyc06g083580.4.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Solyc09g061890.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Zm00001e024959_P001 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Zm00001e037311_P001 | No alias | pectate lyase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Neighborhood |
| MF | GO:0003883 | CTP synthase activity | IEP | Neighborhood |
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Neighborhood |
| MF | GO:0004867 | serine-type endopeptidase inhibitor activity | IEP | Neighborhood |
| MF | GO:0005215 | transporter activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005618 | cell wall | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Neighborhood |
| BP | GO:0006810 | transport | IEP | Neighborhood |
| BP | GO:0006811 | ion transport | IEP | Neighborhood |
| BP | GO:0006820 | anion transport | IEP | Neighborhood |
| BP | GO:0006950 | response to stress | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008272 | sulfate transport | IEP | Neighborhood |
| CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Neighborhood |
| MF | GO:0008509 | anion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | Neighborhood |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Neighborhood |
| BP | GO:0009611 | response to wounding | IEP | Neighborhood |
| BP | GO:0010215 | cellulose microfibril organization | IEP | Neighborhood |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015267 | channel activity | IEP | Neighborhood |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0015698 | inorganic anion transport | IEP | Neighborhood |
| CC | GO:0016021 | integral component of membrane | IEP | Neighborhood |
| BP | GO:0016049 | cell growth | IEP | Neighborhood |
| MF | GO:0016762 | xyloglucan:xyloglucosyl transferase activity | IEP | Neighborhood |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0019888 | protein phosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0030198 | extracellular matrix organization | IEP | Neighborhood |
| MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
| CC | GO:0030312 | external encapsulating structure | IEP | Neighborhood |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Neighborhood |
| CC | GO:0031225 | anchored component of membrane | IEP | Neighborhood |
| BP | GO:0040007 | growth | IEP | Neighborhood |
| BP | GO:0043062 | extracellular structure organization | IEP | Neighborhood |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Neighborhood |
| CC | GO:0044425 | membrane part | IEP | Neighborhood |
| CC | GO:0048046 | apoplast | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0055085 | transmembrane transport | IEP | Neighborhood |
| BP | GO:0072348 | sulfur compound transport | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0098772 | molecular function regulator | IEP | Neighborhood |
| MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | Neighborhood |
| CC | GO:1903293 | phosphatase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 164 | 345 |
| No external refs found! |