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  5. GSVIVT01029336001

GSVIVT01029336001


Description : Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029336001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AT3G51320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
LOC_Os01g65840.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.12 Archaeplastida
LOC_Os02g41560.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.14 Archaeplastida
LOC_Os04g33840.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os05g01635.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.03 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.5 Archaeplastida
Smo111471 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 Archaeplastida
Smo81964 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Solyc08g079640.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.33 Archaeplastida
Solyc11g006940.3.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Solyc11g012570.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.09 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 162 187
IPR002885 Pentatricopeptide_repeat 262 288
IPR002885 Pentatricopeptide_repeat 69 91
IPR002885 Pentatricopeptide_repeat 99 125
IPR002885 Pentatricopeptide_repeat 233 253
IPR002885 Pentatricopeptide_repeat 300 324
IPR002885 Pentatricopeptide_repeat 127 158
No external refs found!