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  5. GSVIVT01029415001

GSVIVT01029415001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIb basal transcription factor


Gene families : OG0001457 (Archaeplastida) Phylogenetic Tree(s): OG0001457_tree ,
OG_05_0004318 (LandPlants) Phylogenetic Tree(s): OG_05_0004318_tree ,
OG_06_0005151 (SeedPlants) Phylogenetic Tree(s): OG_06_0005151_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029415001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000361.24 No alias No description available 0.02 Archaeplastida
Zm00001e032309_P001 No alias Transcription initiation factor IIB OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013137 Znf_TFIIB 6 47
IPR013150 TFIIB_cyclin 213 281
IPR013150 TFIIB_cyclin 112 176
No external refs found!