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  5. AMTR_s00044p00072910

AMTR_s00044p00072910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.44

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor


Gene families : OG0000637 (Archaeplastida) Phylogenetic Tree(s): OG0000637_tree ,
OG_05_0000630 (LandPlants) Phylogenetic Tree(s): OG_05_0000630_tree ,
OG_06_0000581 (SeedPlants) Phylogenetic Tree(s): OG_06_0000581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00072910
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT3G09600 No alias Homeodomain-like superfamily protein 0.06 Archaeplastida
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.12 Archaeplastida
Cpa|evm.model.tig00000217.44 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01027456001 No alias Multi-process regulation.circadian clock.core oscillator... 0.06 Archaeplastida
GSVIVT01035231001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
Pp3c4_2590V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Solyc03g098320.4.1 No alias transcription factor (MYB-related) 0.1 Archaeplastida
Solyc10g084370.3.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.07 Archaeplastida
Zm00001e013333_P002 No alias transcription factor (MYB-related) 0.1 Archaeplastida
Zm00001e023232_P002 No alias transcription factor (MYB-related). REVEILLE circadian... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 62 106
No external refs found!