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  5. GSVIVT01029553001

GSVIVT01029553001


Description : Pumilio homolog 5 OS=Arabidopsis thaliana


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0004029 (SeedPlants) Phylogenetic Tree(s): OG_06_0004029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029553001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G29190 APUM2, PUM2 pumilio 2 0.03 Archaeplastida
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_30039 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_31285 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_42218g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_9025256g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp7g16700.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Pp3c3_36960V3.1 No alias pumilio 1 0.04 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.04 Archaeplastida
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
Smo86145 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e021916_P002 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e023593_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 464 696
IPR001313 Pumilio_RNA-bd_rpt 772 802
IPR001313 Pumilio_RNA-bd_rpt 806 839
IPR001313 Pumilio_RNA-bd_rpt 842 874
IPR001313 Pumilio_RNA-bd_rpt 735 765
IPR001313 Pumilio_RNA-bd_rpt 959 989
IPR001313 Pumilio_RNA-bd_rpt 700 727
IPR001313 Pumilio_RNA-bd_rpt 915 947
No external refs found!