GSVIVT01029659001

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component

Gene families : OG0002697 (Archaeplastida) Phylogenetic Tree(s): OG0002697_tree ,
OG_05_0002794 (LandPlants) Phylogenetic Tree(s): OG_05_0002794_tree ,
OG_06_0003018 (SeedPlants) Phylogenetic Tree(s): OG_06_0003018_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01029659001
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_102279g0010	No alias	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004177	aminopeptidase activity	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007282	NOT	64	151

External Links

No external refs found!

GSVIVT01029659001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation