GSVIVT01029942001

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0001039 (SeedPlants) Phylogenetic Tree(s): OG_06_0001039_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01029942001
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00149750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00023p00181320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
AMTR_s00051p00020930	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.09	Archaeplastida
AT1G46480	WOX4	WUSCHEL related homeobox 4	0.04	Archaeplastida
AT2G28610	WOX3, PRS1, PRS	Homeodomain-like superfamily protein	0.04	Archaeplastida
AT3G03660	WOX11	WUSCHEL related homeobox 11	0.03	Archaeplastida
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.03	Archaeplastida
AT5G05770	WOX7	WUSCHEL related homeobox 7	0.03	Archaeplastida
AT5G46010	No alias	Homeodomain-like superfamily protein	0.02	Archaeplastida
GSVIVT01008424001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01016360001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01018787001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Gb_12565	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os01g62310.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os03g20910.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
LOC_Os07g48560.1	No alias	transcription factor (WOX)	0.06	Archaeplastida
MA_10234279g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_10344604g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_121643g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_1910g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_42637g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_747816g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_8832398g0010	No alias	transcription factor (WOX)	0.03	Archaeplastida
MA_8850184g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc02g077390.2.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
Solyc04g078650.4.1	No alias	transcription factor (WOX)	0.13	Archaeplastida
Solyc11g072770.2.1	No alias	transcription factor (WOX)	0.02	Archaeplastida
Solyc11g072790.2.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e006644_P002	No alias	transcription factor (WOX)	0.05	Archaeplastida
Zm00001e009121_P001	No alias	transcription factor (WOX)	0.07	Archaeplastida
Zm00001e024169_P001	No alias	transcription factor (WOX)	0.05	Archaeplastida
Zm00001e029534_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e038272_P001	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e041785_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	Neighborhood
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
MF	GO:0008172	S-methyltransferase activity	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
CC	GO:0031012	extracellular matrix	IEP	Neighborhood
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
CC	GO:0044421	extracellular region part	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	17	77

External Links

No external refs found!

GSVIVT01029942001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation