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  5. GSVIVT01030055001

GSVIVT01030055001


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030055001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00165480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g07290,... 0.05 Archaeplastida
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
Gb_13219 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
LOC_Os06g47570.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_565112g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Smo62267 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.03 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 Archaeplastida
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0032947 protein-containing complex scaffold activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 441 490
IPR002885 Pentatricopeptide_repeat 339 384
IPR002885 Pentatricopeptide_repeat 654 698
IPR002885 Pentatricopeptide_repeat 164 209
IPR002885 Pentatricopeptide_repeat 231 280
IPR002885 Pentatricopeptide_repeat 581 630
IPR002885 Pentatricopeptide_repeat 305 334
IPR002885 Pentatricopeptide_repeat 501 556
IPR002885 Pentatricopeptide_repeat 405 434
No external refs found!