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  5. GSVIVT01030375001

GSVIVT01030375001


Description : Cell wall.cell wall proteins.expansins.beta-type expansin


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0000369 (LandPlants) Phylogenetic Tree(s): OG_05_0000369_tree ,
OG_06_0005944 (SeedPlants) Phylogenetic Tree(s): OG_06_0005944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030375001
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g42650.1 No alias beta-class expansin 0.02 Archaeplastida
LOC_Os03g01260.1 No alias Expansin-B8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os10g40730.1 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_3753692g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Smo234188 No alias Expansin-B16 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Zm00001e002274_P001 No alias Expansin-B9 OS=Zea mays (sp|q07154|expb9_maize : 343.0) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 70 134
IPR007117 Expansin_CBD 162 243
No external refs found!