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  5. GSVIVT01030481001

GSVIVT01030481001


Description : Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0001704 (LandPlants) Phylogenetic Tree(s): OG_05_0001704_tree ,
OG_06_0001136 (SeedPlants) Phylogenetic Tree(s): OG_06_0001136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030481001
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 Archaeplastida
AT4G15417 ATRTL1, RTL1 RNAse II-like 1 0.03 Archaeplastida
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Archaeplastida
Gb_37867 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Gb_37868 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10434435g0010 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc07g049150.2.1 No alias Ribonuclease 3-like protein 3 OS=Oryza sativa subsp.... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006098 pentose-phosphate shunt IEP Neighborhood
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
BP GO:0019362 pyridine nucleotide metabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051156 glucose 6-phosphate metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0072524 pyridine-containing compound metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 64 170
No external refs found!