GSVIVT01030488001

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030488001
Cluster	HCCA: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00026p00162850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.06	Archaeplastida
Gb_00573	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Gb_10887	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os01g19694.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os03g51690.2	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os05g03884.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os06g43860.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os07g03770.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os08g19650.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
MA_9556g0010	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.02	Archaeplastida
Pp3c5_26440V3.1	No alias	KNOTTED1-like homeobox gene 3	0.03	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Solyc02g081120.4.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005170_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e005825_P002	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e012294_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e039044_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005541	KNOX2	47	93
IPR005540	KNOX1	1	35
IPR005539	ELK_dom	130	151
IPR008422	Homeobox_KN_domain	170	209

External Links

No external refs found!

GSVIVT01030488001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation